5 with SYBR Green I and with the TaqMan probe, the annealing temp

5 with SYBR Green I and with the TaqMan probe, the annealing temperature was set to 55°C, while for the real-time PCR with the HybProbes the annealing temperature was set to 57°C, as determined by the manufacturer of the primers and

DAPT probes (TIB Molbiol, Berlin, Germany). For the commercially available TaqMan Pseudomonas aeruginosa detection kit the annealing temperature was set to 60°C, according to the manufacturers’ instructions. Acknowledgements Pieter Deschaght is indebted to the IWT for PhD research grant IWT-SB/71184. Thierry De Baere is indebted to the FWO for a postdoctoral research grant. This study was funded by the Belgian Cystic Fibrosis Association. References 1. Gibson RL, Burns JL, Ramsey BW: Pathophysiology and management of pulmonary infections in cystic fibrosis. Am J Respir Crit Care Med 2003, 168:918–951.CrossRefPubMed 2. Saiman L, Siegel J: Infection control in cystic fibrosis. Clin Microbiol Rev 2004, 17:57–71.CrossRefPubMed 3. Kerem E, Corey N, Gold R, Levison H: Pulmonary

function and clinical course in patients with cystic fibrosis after pulmonary colonisation with Pseudomonas aeruginosa. J Pediatr 1990, 116:714–719.CrossRefPubMed 4. Henry RL, Mellis CM, Petrovic L: Mucoid Pseudomonas aeruginosa is a marker of poor survival in cystic fibrosis. Pediatr Pulmonol 1992, 12:158–161.CrossRefPubMed 5. Kosorok MR, Zeng L, West SE, Rock MJ, Splaingard ML, Laxova A, Green CG, Collins

J, Farrell PM: Acceleration of lung disease in children with cystic fibrosis after EGFR inhibitor Pseudomonas aeruginosa acquisition. Pediatr Pulmonol 2001, 32:277–287.CrossRefPubMed 6. Frederiksen B, Koch C, Høiby N: Antibiotic treatment of initial colonization with Pseudomonas aeruginosa enough postpones chronic infection and prevents deterioration of pulmonary function in cystic fibrosis. Pediatr Pulmonol 1997, 23:330–335.CrossRefPubMed 7. Valerius NH, Koch C, Høiby N: Prevention of chronic Pseudomonas aeruginosa colonisation in cystic fibrosis by early treatment. Lancet 1991, 21:725–726.CrossRef 8. Van Belkum A, Renders NHM, Smith S, Overbeek SE, Verbrugh HA: Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis. FEMS Immunol Med Microbiol 2000, 27:51–57.CrossRefPubMed 9. De Vos D, De Chial M, Cochez C, Jansen S, Tümmler B, Meyer JM, Cornelis P: Study of pyoverdine type and production by Pseudomonas aeruginosa isolated from cystic fibrosis patients: prevalence of type II pyoverdine isolates and accumulation of pyoverdine-negative mutations. Arch Microbiol 2001, 175:384–388.CrossRefPubMed 10. Taylor RFH, Hodson ME, Pitt TL: Adult cystic fibrosis: association of acute pulmonary exacerbations and increasing severity of lung disease with auxotrophic mutants of Pseudomonas aeruginosa. Thorax 1993, 48:1002–1005.CrossRefPubMed 11.

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