The resulting values were plotted, with ratio of the human genomic DNA digested with StuI and TH-302 manufacturer undigested human genomic DNA as log2 fold change on the ordinate axis. The nucleotide position of the StuI restriction enzyme site relative to the center of the 9-mer probe is plotted on the abscissa axis. Probe specificity analysis of individual 9-mer probes is confirmed by demonstrating that the center most base governs the hybridization kinetics. This is shown by a reduction in probe signal

intensity values when the human genomic DNA sample was digested with StuI enzyme. The reduction in the probe intensity signal is greater when the restriction enzyme site is located at the center of the 9-mer probe. Therefore the center nucleotide of the probe is the most restrictive in determining the specificity of the probe hybridization complex. (PDF 16 KB) Additional file 5: Table S3 Genomes hybridized on the

array. Genomic DNA from the following genomes was hybridized on the UBDA array. (PDF 9 KB) Additional file 6: Annotation file for 9-mer probes on the UBDA array. (CSV 19 MB) Additional file 7: Annotation file for all other probes on the UBDA array. Genomic DNA from the following genomes was hybridized on the UBDA array. (CSV 6 MB) References 1. Pannucci J, Cai H, Pardington PE, Williams E, Okinaka RT, Kuske CR, Cary selleck chemicals RB: Virulence signatures: microarray-based approaches to discovery and analysis. Biosens Bioelectron 2004,20(4):706–718.PubMedCrossRef 2. Ruiz-Mesa JD, Sanchez-Gonzalez J, Reguera JM, Martin L, Lopez-Palmero S, Colmenero JD: Rose Bengal test: diagnostic yield and use for the rapid diagnosis of human brucellosis in emergency departments in endemic areas. Clin Microbiol Infect 2005,11(3):221–225.PubMedCrossRef 3. Bricker BJ: PCR as a diagnostic tool for

brucellosis. Vet Microbiol 2002,90(1–4):435–446.PubMedCrossRef 17-DMAG (Alvespimycin) HCl 4. Bounaadja L, Albert D, Chenais B, Henault S, Zygmunt MS, Poliak S, Garin-Bastuji B: Real-time PCR for identification of Brucella spp.: a comparative study of IS711, bcsp31 and per target genes. Vet Microbiol 2009,137(1–2):156–164.PubMedCrossRef 5. Hinic V, Brodard I, Thomann A, Holub M, Miserez R, Abril C: IS711-based real-time PCR assay as a tool for detection of Brucella spp. in wild boars and comparison with bacterial isolation and serology. BMC Vet Res 2009, 5:22.PubMedCrossRef 6. Her M, Kang SI, Kim JW, Kim JY, Hwang IY, Jung SC, Park SH, Park MY, Yoo H: A genetic comparison of Brucella abortus isolates from animals and humans by using an MLVA assay. J Microbiol Biotechnol 2010,20(12):1750–1755.PubMed 7. Whatmore AM, Perrett LL, MacMillan AP: Characterisation of the genetic PFT�� concentration diversity of Brucella by multilocus sequencing. BMC Microbiol 2007, 7:34.PubMedCrossRef 8.